Detailed information of SNP:
|
SNP ID:
sf0414618767(Gbrowse)
Chromosome: chr04 Position: 14618767 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 89.79% | 10.21% |
| All Indica | 789 | 90.62% | 9.38% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 60 | 11.67% | 88.33% |
| Indica I | 371 | 97.30% | 2.70% |
| Indica II | 209 | 72.25% | 27.75% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414618767 | A->G | INTERGENIC | None |