Detailed information of SNP:
|
SNP ID:
sf0414666668(Gbrowse)
Chromosome: chr04 Position: 14666668 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 78.85% | 21.15% |
| All Indica | 756 | 88.10% | 11.90% |
| All Japonica | 497 | 75.65% | 24.35% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 339 | 98.23% | 1.77% |
| Indica II | 208 | 62.98% | 37.02% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 65.07% | 34.93% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414666668 | A->G | LOC_Os04g25360(LOC_Os04g25360.1) | Synonymous |
| sf0414666668 | A->G | LOC_Os04g25360(LOC_Os04g25360.2) | Synonymous |