Detailed information of SNP:
|
SNP ID:
sf0414752542(Gbrowse)
Chromosome: chr04 Position: 14752542 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 88.02% | 11.98% |
| All Indica | 793 | 87.01% | 12.99% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 208 | 72.12% | 27.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414752542 | C->T | INTERGENIC | None |