Detailed information of SNP:
|
SNP ID:
sf0414773555(Gbrowse)
Chromosome: chr04 Position: 14773555 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 85.13% | 14.87% |
| All Indica | 793 | 83.73% | 16.27% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 369 | 91.60% | 8.40% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414773555 | T->C | INTERGENIC | None |