Detailed information of SNP:
|
SNP ID:
sf0414782759(Gbrowse)
Chromosome: chr04 Position: 14782759 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 94.88% | 5.12% |
| All Indica | 788 | 91.50% | 8.50% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 92.20% | 7.80% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 205 | 88.78% | 11.22% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414782759 | T->C | LOC_Os04g25499(LOC_Os04g25499.1) | Non-Synonymous SNP |