Detailed information of SNP:
|
SNP ID:
sf0414784464(Gbrowse)
Chromosome: chr04 Position: 14784464 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 75.37% | 24.63% |
| All Indica | 797 | 82.06% | 17.94% |
| All Japonica | 497 | 74.85% | 25.15% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 212 | 56.60% | 43.40% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 64.18% | 35.82% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414784464 | C->T | INTERGENIC | None |