Detailed information of SNP:
|
SNP ID:
sf0414928242(Gbrowse)
Chromosome: chr04 Position: 14928242 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 88.90% | 11.10% |
| All Indica | 791 | 88.50% | 11.50% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 63 | 12.70% | 87.30% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 208 | 70.67% | 29.33% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414928242 | C->T | INTERGENIC | None |