Detailed information of SNP:
|
SNP ID:
sf0414945429(Gbrowse)
Chromosome: chr04 Position: 14945429 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 88.28% | 11.72% |
| All Indica | 798 | 88.72% | 11.28% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 3.08% | 96.92% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 212 | 66.98% | 33.02% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414945429 | A->G | INTERGENIC | None |