Detailed information of SNP:
|
SNP ID:
sf0415015260(Gbrowse)
Chromosome: chr04 Position: 15015260 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 89.28% | 10.72% |
| All Indica | 789 | 91.00% | 9.00% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 367 | 89.65% | 10.35% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415015260 | A->G | INTERGENIC | None |