Detailed information of SNP:
|
SNP ID:
sf0415042606(Gbrowse)
Chromosome: chr04 Position: 15042606 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 86.99% | 13.01% |
| All Indica | 781 | 88.73% | 11.27% |
| All Japonica | 495 | 96.36% | 3.64% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 368 | 91.85% | 8.15% |
| Indica II | 205 | 79.51% | 20.49% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415042606 | C->A | INTERGENIC | None |