Detailed information of SNP:
|
SNP ID:
sf0415137171(Gbrowse)
Chromosome: chr04 Position: 15137171 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 92.54% | 7.46% |
| All Indica | 796 | 96.61% | 3.39% |
| All Japonica | 480 | 85.21% | 14.79% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 320 | 79.69% | 20.31% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415137171 | T->C | INTERGENIC | None |