Detailed information of SNP:
|
SNP ID:
sf0415137829(Gbrowse)
Chromosome: chr04 Position: 15137829 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 98.63% | 1.37% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 470 | 97.02% | 2.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 99.52% | 0.48% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 95.78% | 4.22% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415137829 | C->T | INTERGENIC | None |