Detailed information of SNP:
|
SNP ID:
sf0415188953(Gbrowse)
Chromosome: chr04 Position: 15188953 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 93.93% | 6.07% |
| All Indica | 743 | 94.35% | 5.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 40 | 17.50% | 82.50% |
| Indica I | 350 | 97.14% | 2.86% |
| Indica II | 186 | 83.87% | 16.13% |
| Indica Intermediate | 207 | 99.03% | 0.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415188953 | C->T | INTERGENIC | None |