Detailed information of SNP:
|
SNP ID:
sf0415193838(Gbrowse)
Chromosome: chr04 Position: 15193838 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 93.03% | 6.97% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 471 | 81.53% | 18.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 315 | 76.83% | 23.17% |
| Tropical Japonica | 90 | 93.33% | 6.67% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415193838 | A->G | LOC_Os04g26110(LOC_Os04g26110.1) | INTRON |