Detailed information of SNP:
|
SNP ID:
sf0415201394(Gbrowse)
Chromosome: chr04 Position: 15201394 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1220 | 81.89% | 18.11% |
| All Indica | 719 | 80.81% | 19.19% |
| All Japonica | 387 | 98.97% | 1.03% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 326 | 87.12% | 12.88% |
| Indica II | 204 | 58.33% | 41.67% |
| Indica Intermediate | 189 | 94.18% | 5.82% |
| Temperate Japonica | 232 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 35 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415201394 | C->T | LOC_Os04g26120(LOC_Os04g26120.1) | INTRON |