Detailed information of SNP:
|
SNP ID:
sf0415221150(Gbrowse)
Chromosome: chr04 Position: 15221150 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 77.66% | 22.34% |
| All Indica | 783 | 73.44% | 26.56% |
| All Japonica | 487 | 95.28% | 4.72% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 360 | 68.89% | 31.11% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 326 | 95.09% | 4.91% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415221150 | A->G | INTERGENIC | None |