Detailed information of SNP:
|
SNP ID:
sf0415463981(Gbrowse)
Chromosome: chr04 Position: 15463981 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 92.31% | 7.69% |
| All Indica | 793 | 92.94% | 7.06% |
| All Japonica | 493 | 95.13% | 4.87% |
| Aus | 64 | 59.38% | 40.62% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 331 | 93.96% | 6.04% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415463981 | A->G | INTERGENIC | None |