Detailed information of SNP:
|
SNP ID:
sf0415528744(Gbrowse)
Chromosome: chr04 Position: 15528744 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 94.63% | 5.37% |
| All Indica | 798 | 96.12% | 3.88% |
| All Japonica | 495 | 91.52% | 8.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 333 | 93.09% | 6.91% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415528744 | C->A | INTERGENIC | None |