Detailed information of SNP:
|
SNP ID:
sf0415578513(Gbrowse)
Chromosome: chr04 Position: 15578513 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 97.39% | 2.61% |
| All Indica | 768 | 95.83% | 4.17% |
| All Japonica | 491 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 361 | 98.06% | 1.94% |
| Indica II | 201 | 92.04% | 7.96% |
| Indica Intermediate | 206 | 95.63% | 4.37% |
| Temperate Japonica | 329 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415578513 | T->C | INTERGENIC | None |