Detailed information of SNP:
|
SNP ID:
sf0415608959(Gbrowse)
Chromosome: chr04 Position: 15608959 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 95.55% | 4.45% |
| All Indica | 797 | 96.61% | 3.39% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415608959 | T->C | LOC_Os04g26730(LOC_Os04g26730.1) | Synonymous |