Detailed information of SNP:
|
SNP ID:
sf0415612088(Gbrowse)
Chromosome: chr04 Position: 15612088 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 96.55% | 3.45% |
| All Indica | 777 | 95.24% | 4.76% |
| All Japonica | 479 | 99.58% | 0.42% |
| Aus | 53 | 84.91% | 15.09% |
| Indica I | 361 | 95.29% | 4.71% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 317 | 99.68% | 0.32% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415612088 | A->G | INTERGENIC | None |