Detailed information of SNP:
|
SNP ID:
sf0415794020(Gbrowse)
Chromosome: chr04 Position: 15794020 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 90.12% | 9.88% |
| All Indica | 781 | 90.65% | 9.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 23.81% | 76.19% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 70.33% | 29.67% |
| Indica Intermediate | 197 | 94.42% | 5.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415794020 | G->T | INTERGENIC | None |