Detailed information of SNP:
|
SNP ID:
sf0415794850(Gbrowse)
Chromosome: chr04 Position: 15794850 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 89.70% | 10.30% |
| All Indica | 790 | 89.24% | 10.76% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 23.08% | 76.92% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 71.29% | 28.71% |
| Indica Intermediate | 206 | 87.86% | 12.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415794850 | T->A | INTERGENIC | None |