Detailed information of SNP:



SNP ID: sf0415854590(Gbrowse)

Chromosome: chr04

Position: 15854590
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1411 98.65% 1.35%
All Indica798 100.00% 0.00%
All Japonica491 96.13% 3.87%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II212 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica330 94.24% 5.76%
Tropical Japonica93 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0415854590 C->T INTERGENIC None