Detailed information of SNP:
|
SNP ID:
sf0415861784(Gbrowse)
Chromosome: chr04 Position: 15861784 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 95.06% | 4.94% |
| All Indica | 798 | 93.11% | 6.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415861784 | A->G | INTERGENIC | None |