Detailed information of SNP:
|
SNP ID:
sf0415929938(Gbrowse)
Chromosome: chr04 Position: 15929938 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 93.69% | 6.31% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 59 | 52.54% | 47.46% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415929938 | A->G | LOC_Os04g27250(LOC_Os04g27250.1) | Non-Synonymous SNP |
| sf0415929938 | A->G | LOC_Os04g27250(LOC_Os04g27250.4) | INTRON |
| sf0415929938 | A->G | LOC_Os04g27250(LOC_Os04g27250.2) | Non-Synonymous SNP |
| sf0415929938 | A->G | LOC_Os04g27250(LOC_Os04g27250.3) | Non-Synonymous SNP |