Detailed information of SNP:
|
SNP ID:
sf0415935968(Gbrowse)
Chromosome: chr04 Position: 15935968 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 82.89% | 17.11% |
| All Indica | 778 | 95.37% | 4.63% |
| All Japonica | 496 | 63.31% | 36.69% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 205 | 93.17% | 6.83% |
| Indica Intermediate | 199 | 94.97% | 5.03% |
| Temperate Japonica | 335 | 62.09% | 37.91% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415935968 | T->C | INTERGENIC | None |