Detailed information of SNP:
|
SNP ID:
sf0415941190(Gbrowse)
Chromosome: chr04 Position: 15941190 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 95.56% | 4.44% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415941190 | T->C | INTERGENIC | None |