Detailed information of SNP:
|
SNP ID:
sf0415975205(Gbrowse)
Chromosome: chr04 Position: 15975205 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 81.81% | 18.19% |
| All Indica | 790 | 95.70% | 4.30% |
| All Japonica | 495 | 59.19% | 40.81% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 335 | 61.79% | 38.21% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415975205 | A->G | LOC_Os04g27320(LOC_Os04g27320.1) | Non-Synonymous SNP |