Detailed information of SNP:
|
SNP ID:
sf0415977449(Gbrowse)
Chromosome: chr04 Position: 15977449 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 94.20% | 5.80% |
| All Indica | 794 | 95.72% | 4.28% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 371 | 95.42% | 4.58% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0415977449 | T->C | INTERGENIC | None |