Detailed information of SNP:
|
SNP ID:
sf0416016701(Gbrowse)
Chromosome: chr04 Position: 16016701 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 84.34% | 15.66% |
| All Indica | 798 | 85.34% | 14.66% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416016701 | T->C | LOC_Os04g27400(LOC_Os04g27400.1) | Synonymous |