Detailed information of SNP:
|
SNP ID:
sf0416017146(Gbrowse)
Chromosome: chr04 Position: 16017146 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 95.52% | 4.48% |
| All Indica | 797 | 93.98% | 6.02% |
| All Japonica | 490 | 96.94% | 3.06% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 83.91% | 16.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416017146 | T->C | LOC_Os04g27400(LOC_Os04g27400.1) | Non-Synonymous SNP |