Detailed information of SNP:
|
SNP ID:
sf0416029193(Gbrowse)
Chromosome: chr04 Position: 16029193 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 91.64% | 8.36% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 8 | 62.50% | 37.50% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416029193 | C->T | LOC_Os04g27410(LOC_Os04g27410.1) | INTRON |