Detailed information of SNP:
|
SNP ID:
sf0416071485(Gbrowse)
Chromosome: chr04 Position: 16071485 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1307 | 91.51% | 8.49% |
| All Indica | 784 | 97.96% | 2.04% |
| All Japonica | 402 | 79.60% | 20.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 371 | 99.19% | 0.81% |
| Indica II | 206 | 97.57% | 2.43% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 266 | 72.93% | 27.07% |
| Tropical Japonica | 76 | 96.05% | 3.95% |
| Japonica Intermediate | 60 | 88.33% | 11.67% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416071485 | C->T | LOC_Os04g27480(LOC_Os04g27480.1) | INTRON |