Detailed information of SNP:
|
SNP ID:
sf0416156824(Gbrowse)
Chromosome: chr04 Position: 16156824 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 88.98% | 11.02% |
| All Indica | 797 | 92.47% | 7.53% |
| All Japonica | 492 | 86.38% | 13.62% |
| Aus | 65 | 73.85% | 26.15% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 333 | 93.39% | 6.61% |
| Tropical Japonica | 92 | 60.87% | 39.13% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416156824 | A->G | LOC_Os04g27610(LOC_Os04g27610.1) | Synonymous |