Detailed information of SNP:
|
SNP ID:
sf0416165021(Gbrowse)
Chromosome: chr04 Position: 16165021 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 98.08% | 1.92% |
| All Indica | 796 | 98.74% | 1.26% |
| All Japonica | 493 | 97.97% | 2.03% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416165021 | A->G | LOC_Os04g27630(LOC_Os04g27630.1) | Non-Synonymous SNP |