Detailed information of SNP:
|
SNP ID:
sf0416229077(Gbrowse)
Chromosome: chr04 Position: 16229077 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 94.54% | 5.46% |
| All Indica | 796 | 98.12% | 1.88% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 63 | 52.38% | 47.62% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416229077 | C->T | INTERGENIC | None |