Detailed information of SNP:



SNP ID: sf0416372491(Gbrowse)

Chromosome: chr04

Position: 16372491
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1417 58.15% 41.85%
All Indica798 65.79% 34.21%
All Japonica497 47.48% 52.52%
Aus67 52.24% 47.76%
Indica I375 56.80% 43.20%
Indica II213 73.71% 26.29%
Indica Intermediate210 73.81% 26.19%
Temperate Japonica335 34.03% 65.97%
Tropical Japonica94 80.85% 19.15%
Japonica Intermediate68 67.65% 32.35%
Group VI/Aromatic13 0.00% 100.00%
Intermediate42 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0416372491 A->G INTERGENIC None