Detailed information of SNP:
SNP ID:
sf0416372491(Gbrowse)
Chromosome: chr04 Position: 16372491 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1417 | 58.15% | 41.85% |
All Indica | 798 | 65.79% | 34.21% |
All Japonica | 497 | 47.48% | 52.52% |
Aus | 67 | 52.24% | 47.76% |
Indica I | 375 | 56.80% | 43.20% |
Indica II | 213 | 73.71% | 26.29% |
Indica Intermediate | 210 | 73.81% | 26.19% |
Temperate Japonica | 335 | 34.03% | 65.97% |
Tropical Japonica | 94 | 80.85% | 19.15% |
Japonica Intermediate | 68 | 67.65% | 32.35% |
Group VI/Aromatic | 13 | 0.00% | 100.00% |
Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0416372491 | A->G | INTERGENIC | None |