Detailed information of SNP:
|
SNP ID:
sf0416372601(Gbrowse)
Chromosome: chr04 Position: 16372601 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 52.65% | 47.35% |
| All Indica | 797 | 59.85% | 40.15% |
| All Japonica | 497 | 48.09% | 51.91% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 45.33% | 54.67% |
| Indica II | 211 | 73.93% | 26.07% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 34.63% | 65.37% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416372601 | C->G | INTERGENIC | None |