Detailed information of SNP:
|
SNP ID:
sf0416386886(Gbrowse)
Chromosome: chr04 Position: 16386886 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 51.56% | 48.44% |
| All Indica | 794 | 41.44% | 58.56% |
| All Japonica | 497 | 60.76% | 39.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 55.61% | 44.39% |
| Indica II | 212 | 28.77% | 71.23% |
| Indica Intermediate | 208 | 28.85% | 71.15% |
| Temperate Japonica | 335 | 66.57% | 33.43% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416386886 | C->T | LOC_Os04g28040(LOC_Os04g28040.1) | INTRON |