Detailed information of SNP:
|
SNP ID:
sf0416421572(Gbrowse)
Chromosome: chr04 Position: 16421572 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 52.93% | 47.07% |
| All Indica | 798 | 39.60% | 60.40% |
| All Japonica | 496 | 74.19% | 25.81% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 44.92% | 55.08% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 84.78% | 15.22% |
| Tropical Japonica | 93 | 53.76% | 46.24% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416421572 | G->T | LOC_Os04g28100(LOC_Os04g28100.1) | INTRON |