Detailed information of SNP:
|
SNP ID:
sf0416463272(Gbrowse)
Chromosome: chr04 Position: 16463272 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.79% | 37.21% |
| All Indica | 799 | 40.18% | 59.82% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 45.60% | 54.40% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 211 | 39.34% | 60.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416463272 | G->A | INTERGENIC | None |