Detailed information of SNP:
|
SNP ID:
sf0416496204(Gbrowse)
Chromosome: chr04 Position: 16496204 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 93.49% | 6.51% |
| All Indica | 795 | 91.82% | 8.18% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 83.87% | 16.13% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416496204 | C->G | LOC_Os04g28210(LOC_Os04g28210.1) | Non-Synonymous SNP |