Detailed information of SNP:
|
SNP ID:
sf0416506455(Gbrowse)
Chromosome: chr04 Position: 16506455 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 94.91% | 5.09% |
| All Indica | 765 | 92.68% | 7.32% |
| All Japonica | 490 | 97.55% | 2.45% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 364 | 96.15% | 3.85% |
| Indica II | 200 | 88.00% | 12.00% |
| Indica Intermediate | 201 | 91.04% | 8.96% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 88.51% | 11.49% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416506455 | T->C | LOC_Os04g28220(LOC_Os04g28220.1) | Non-Synonymous SNP |