Detailed information of SNP:
|
SNP ID:
sf0416506984(Gbrowse)
Chromosome: chr04 Position: 16506984 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 94.61% | 5.39% |
| All Indica | 754 | 92.04% | 7.96% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 356 | 95.51% | 4.49% |
| Indica II | 197 | 87.82% | 12.18% |
| Indica Intermediate | 201 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416506984 | C->T | LOC_Os04g28220(LOC_Os04g28220.1) | INTRON |