Detailed information of SNP:



SNP ID: sf0416540713(Gbrowse)

Chromosome: chr04

Position: 16540713
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1414 98.66% 1.34%
All Indica798 100.00% 0.00%
All Japonica497 96.98% 3.02%
Aus66 95.45% 4.55%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate210 100.00% 0.00%
Temperate Japonica335 95.52% 4.48%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic13 92.31% 7.69%
Intermediate40 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0416540713 C->A INTERGENIC None