Detailed information of SNP:
|
SNP ID:
sf0416547891(Gbrowse)
Chromosome: chr04 Position: 16547891 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 92.38% | 7.62% |
| All Indica | 798 | 88.72% | 11.28% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 78.88% | 21.12% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416547891 | C->A | INTERGENIC | None |