Detailed information of SNP:
|
SNP ID:
sf0416598855(Gbrowse)
Chromosome: chr04 Position: 16598855 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 93.02% | 6.98% |
| All Indica | 788 | 91.12% | 8.88% |
| All Japonica | 493 | 94.52% | 5.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 82.97% | 17.03% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 331 | 91.84% | 8.16% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416598855 | G->A | INTERGENIC | None |