Detailed information of SNP:
|
SNP ID:
sf0416666521(Gbrowse)
Chromosome: chr04 Position: 16666521 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 66.03% | 33.97% |
| All Indica | 789 | 63.75% | 36.25% |
| All Japonica | 493 | 65.31% | 34.69% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 370 | 60.54% | 39.46% |
| Indica II | 211 | 74.41% | 25.59% |
| Indica Intermediate | 208 | 58.65% | 41.35% |
| Temperate Japonica | 334 | 64.07% | 35.93% |
| Tropical Japonica | 91 | 68.13% | 31.87% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416666521 | T->A | INTERGENIC | None |