Detailed information of SNP:
|
SNP ID:
sf0416706833(Gbrowse)
Chromosome: chr04 Position: 16706833 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1337 | 86.16% | 13.84% |
| All Indica | 759 | 93.02% | 6.98% |
| All Japonica | 460 | 72.39% | 27.61% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 355 | 87.32% | 12.68% |
| Indica II | 201 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 96.06% | 3.94% |
| Temperate Japonica | 308 | 65.91% | 34.09% |
| Tropical Japonica | 91 | 94.51% | 5.49% |
| Japonica Intermediate | 61 | 72.13% | 27.87% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0416706833 | C->T | INTERGENIC | None |